Zebrafish CNEs v1.0

This track provides a comprehensive and high-quality annotation of syntenic Conserved Non-genic Elements (CNEs) in the zebrafish (Zv9/danRer7) assembly. Our computational pipeline for CNE detection used highly sensitive alignments to detect remote homologies, and applied strict filters for alignment quality, filters to keep only CNEs that maintain synteny, and filters to exclude genic sequences or alignments between unrelated repeat sequences. Each CNE is conserved in at least two species to avoid DNA contamination.

How was this data set generated?

Explore Data

Filter Data

Show only zCNEs associated with the GREAT regulatory domain of a particular gene

Target gene
(e.g. "fox")
Target genomic region
(e.g. "chr4:5,800,000-5,899,999")
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What if a zCNE is partially in, partially outside of this range?